PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0370s00200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 104aa    MW: 11520.2 Da    PI: 9.68
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0370s00200.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.9e-201868255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +y+G+r+++ +g+++AeIrdp+     +r++lg+f+tae+Aa+a++aa+ +++ 
  Vang0370s00200.1 18 RYRGIRRRP-WGKFAAEIRDPTRK--GARIWLGTFDTAEQAARAYDAAAFRFRA 68
                      6********.**********8542..4***********************9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.6291876IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-261868IPR001471AP2/ERF domain
SMARTSM003801.9E-251882IPR001471AP2/ERF domain
CDDcd000181.08E-151853No hitNo description
PfamPF008474.3E-141868IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-201870IPR016177DNA-binding domain
PRINTSPR003678.1E-121930IPR001471AP2/ERF domain
PRINTSPR003678.1E-124258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MEGGRGVVNG NASNAEVRYR GIRRRPWGKF AAEIRDPTRK GARIWLGTFD TAEQAARAYD  60
AAAFRFRAPY LGFRLQILVD DGEVVVFCIL ALCTSGQINY CIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-231983670ATERF1
3gcc_A3e-231983670ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-109AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014494965.11e-42PREDICTED: uncharacterized protein LOC106756878
SwissprotO803416e-24EF102_ARATH; Ethylene-responsive transcription factor 5
SwissprotQ9LTC51e-24ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0L9T4A16e-42A0A0L9T4A1_PHAAN; Uncharacterized protein
STRINGGLYMA03G31930.16e-32(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-19ERF family protein